General info Cross-references Sequences Orthologs Ortholog sequences Sites Predictions Palmitoyl-proteomes References
Palmitoyl-proteomes
6/17
articles for mouse
3 orthologs
3 orthologs
Validation experiments
0
experiment
1 ortholog
1 ortholog
Curated sites & Enzymes
0
site from validation experiments*
2 sites from palmitoyl-proteomes* Cys143, Cys83
No PAT known
No APT known
*In main isoform only
2 sites from palmitoyl-proteomes* Cys143, Cys83
No PAT known
No APT known
*In main isoform only
Predictions
Predicted
2
cysteines in main isoform
Protein names
Ras-related protein Rab-7a
Subcellular location
Cytoplasmic vesicle (Potential); phagosome membrane (Potential); Late endosome membrane (Potential); Lysosome membrane (Potential); Melanosome membrane (Potential); autophagosome membrane (Potential); Lipid droplet; Endosome membrane (Potential); Phagosome membrane (Potential); Autophagosome membrane (Potential)
Isoforms & protein length
Isoform 1 (main): 207 aa
Known functions
Source | Identifiers |
---|---|
UniProt gene names | Rab7, Rab7a |
Refseq protein ID | XP_006505825.1, XP_006505824.1, NP_033031.2, NP_001280584.1, NP_001280583.1, NP_001280582.1, NP_001280581.1 |
IPI ID | IPI00119053, IPI00756145, IPI00408892 |
Source | Identifiers |
---|---|
Ensembl protein | ENSMUSP00000109230, ENSMUSP00000109228, ENSMUSP00000109227, ENSMUSP00000109226, ENSMUSP00000092658 |
Ensembl gene | ENSMUSG00000079477 |
MGI ID | MGI:105068 |
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UniProt feature viewer
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UniProt AC | st. | UniProt ID | Orthology source | Organism | Gene names | Protein name | Palmitome articles | Times validated | Techniques | Sites | Predicted |
---|---|---|---|---|---|---|---|---|---|---|---|
F4JKR6 | F4JKR6_ARATH | MetaPhors | A. thaliana | RABG3A, F17A8_70, F17A8.70, RAB GTPase homolog G3A, ATRABG3A, At4g09720 | RAB GTPase homolog G3A | 0/1 | 0 | 0 | 0 | Yes | |
P09527 | RAB7A_RAT | OrthoDB, Ensembl, InParanoid, MetaPhors | R. norvegicus | Rab7, Rab7a | Ras-related protein Rab-7a | 1/2 | 0 | 1 | 0 | Yes | |
P51149 | RAB7A_HUMAN | Ensembl, InParanoid, MetaPhors | H. sapiens | RAB7, RAB7A | Ras-related protein Rab-7a | 5/17 | 4 | 3 | 2 | Yes | |
Q3T0F5 | RAB7A_BOVIN | InParanoid, MetaPhors | B. taurus | RAB7, RAB7A | Ras-related protein Rab-7a | 0/1 | 0 | 0 | 0 | Yes | |
Q9HDY0 | YPT71_SCHPO | MetaPhors | S. pombe | SPAPB1A10.10c, ypt71 | GTP-binding protein ypt71 | 0/1 | 0 | 0 | 0 | Yes | |
O94655 | YPT7_SCHPO | InParanoid, MetaPhors | S. pombe | SPBC405.04c, ypt7 | GTP-binding protein ypt7 | 0/1 | 0 | 0 | 0 | Yes | |
Q9XI98 | RAG3E_ARATH | InParanoid, MetaPhors | A. thaliana | F13F21.26, At1g49300, RAB74, RABG3E | Ras-related protein RABG3e | 0/1 | 0 | 0 | 0 | No | |
Q948K8 | RAG3A_ARATH | InParanoid, MetaPhors | A. thaliana | F17A8.70, At4g09720, RAB76, RABG3A | Ras-related protein RABG3a | 0/1 | 0 | 0 | 0 | Yes | |
Q9C820 | RAG3D_ARATH | InParanoid, MetaPhors | A. thaliana | F19K6.10, At1g52280, RAB72, RABG3D | Ras-related protein RABG3d | 0/1 | 0 | 0 | 0 | Yes | |
Q9LS94 | RAG3F_ARATH | InParanoid, MetaPhors | A. thaliana | MVE11.21, At3g18820, RAB7B, RAB71, RABG3F | Ras-related protein RABG3f | 0/1 | 0 | 0 | 0 | No | |
Q9SJ11 | RABG2_ARATH | MetaPhors | A. thaliana | F7D8.20, At2g21880, RAB7A, RAB77, RABG2 | Ras-related protein RABG2 | 0/1 | 0 | 0 | 0 | No | |
Q9LW76 | RAG3C_ARATH | InParanoid, MetaPhors | A. thaliana | MSL1.14, At3g16100, RAB7D, RAB73, RABG3C | Ras-related protein RABG3c | 0/1 | 0 | 0 | 0 | Yes | |
O04157 | RAG3B_ARATH | InParanoid, MetaPhors | A. thaliana | T22J18.9, At1g22740, RAB75, RAB7, RABG3B | Ras-related protein RABG3b | 0/1 | 0 | 0 | 0 | No | |
Q948K6 | RABG1_ARATH | MetaPhors | A. thaliana | MIJ24.90, At5g39620, RAB78, RABG1 | Ras-related protein RABG1 | 1/1 | 0 | 1 | 0 | Yes | |
P32939 | YPT7_YEAST | InParanoid | S. cerevisiae S288c | YM8270.02, YML001W, VAM4, YPT7 | GTP-binding protein YPT7 | 0/1 | 0 | 0 | 0 | Yes | |
C0H516 | C0H516_PLAF7 | InParanoid | P. falciparum | PF3D7_0903200 | Ras-related protein RAB7 | 0/1 | 0 | 0 | 0 | Yes | |
F1MJQ1 | F1MJQ1_BOVIN | OrthoDB, Ensembl, MetaPhors | B. taurus | RAB7A | Ras-related protein Rab-7a | 0/1 | 0 | 0 | 0 | Yes | |
C9J7D1 | C9J7D1_HUMAN | OrthoDB, Ensembl | H. sapiens | RAB7A | Ras-related protein Rab-7a | 0/17 | 0 | 0 | 0 | Yes | |
O76742 | O76742_DROME | OrthoDB, Ensembl, InParanoid, MetaPhors | D. melanogaster | Dmel_CG5915, CG5915, rab7, Rab7, Rab7A, RAB7, Rab-r7, Rab-7, O76742, drab7, dRab7, Drab7, DRab7, DRAB7, DmRab7, Dmel\CG5915, Dm Rab7, AAF56218 | CG5915 protein | 0/1 | 0 | 0 | 0 | Yes | |
Q9V4I1 | CP9B2_DROME | Ensembl | D. melanogaster | CG4486, Cyp9b2 | Cytochrome P450 9b2 | 0/1 | 0 | 0 | 0 | Yes |
Isoforms | Position | Probability | Studies | Techniques |
---|---|---|---|---|
P51150 | 83 | NA | SPalmE:903 Collins MO et al. (2017)* | ABE |
P51150 | 143 | NA | SPalmE:855 Shen LF et al. (2017)* | ARAC |
Pos in alignment | 83 | 84 | 143 | 205 | 207 |
---|---|---|---|---|---|
Subcell. location | U | U | U | U | U |
Disulfide | no | no | no | no | no |
PSIPRED v.4.02 prediction | strand | strand | helix | coil | coil |
UniProt secondary structure | strand | strand | helix | NA | NA |
Pos in isoform 1 [Main]
CSS-Palm 4.0 PalmPred |
Cys83 HC |
Cys84 |
Cys143 |
Cys205 HC |
Cys207 MC |
Legend
Subcell. location | U Undefined E Extracellular/Lumenal T Transmembrane C Cytosolic/Nuclear |
Prediction confidence |
Cysteine position:
Predicted (high confidence prediction with CSS-Palm or/and PalmPred) and validated (in terms of disulfide bonds and cellular location) / Predicted but not validated (in terms of disulfide bond and cellular location) / Not predicted CSS-Palm 4.0: High confidence, Medium confidence, Low confidence, Not predicted. PalmPred: High confidence (score > 0.4), Medium confidence (0.1 < score < 0.4), Low confidence (score < 0.1), Not predicted. |
List of palmitoyl-proteomes
Summary table by organism
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ID of the experiment | Reference | Year | Organism | Cell type | Subcellular location | Technique(s) | Found? | In list | All lists |
---|---|---|---|---|---|---|---|---|---|
SPalmE:14 | Roth AF et al. | 2006 | Saccharomyces cerevisiae | Isogenic LRB759 | Total membrane | ABE | x | HC HC: 48 hits | |
SPalmE:13 | Kang R et al. | 2008 | Rattus norvegicus | Cortical neuron | Synaptosomal membrane | ABE | Ortholog | in LC [RAB7A] |
HC: 107 hits LC: 308 hits |
SPalmE:6 | Martin BR et al. | 2009 | Homo sapiens | Jurkat | Total membrane | Click chemistry | x |
HC: 127 hits LC: 188 hits List: 0 hits |
|
SPalmE:10 | Yount JS et al. | 2010 | Mus musculus | Dendritic cell | Total cell lysate | Click chemistry | x |
HC: 59 hits LC: 105 hits |
|
SPalmE:577 | Yang W et al. | 2010 | Homo sapiens | DU145 | Non-lipid raft | ABE | x |
HC: 63 hits LC: 147 hits |
|
SPalmE:578 | Yang W et al. | 2010 | Homo sapiens | DU145 | Lipid raft | ABE | x |
HC: 102 hits LC: 73 hits |
|
SPalmE:1 | Yang W et al. | 2010 | Homo sapiens | DU145 | Total membrane | ABE | x |
HC: 162 hits LC: 218 hits |
|
SPalmE:2 | Dowal L et al. | 2011 | Homo sapiens | Platelet | Total membrane | ABE | x | List: 214 hits | |
SPalmE:5 | Forrester MT et al. | 2011 | Homo sapiens | HEK293 | Total membrane | ARAC | x | List: 69 hits | |
SPalmE:7 | Wilson JP et al. | 2011 | Homo sapiens | Jurkat | Total cell lysate | Click chemistry | Ortholog | in LC [RAB7A] |
HC: 164 hits LC: 178 hits |
SPalmE:8 | Merrick BA et al. | 2011 | Mus musculus | Macrophage Raw 264.7 | Total membrane | ABE | x | List: 69 hits | |
SPalmE:12 | Martin BR et al. | 2011 | Mus musculus | BW5147-derived mouse T-cell hybridoma cell | Total membrane | Click chemistry | Found | in HC |
HC HC: 352 hits LC LC: 8 hits |
SPalmE:511 | Emmer BT et al. | 2011 | Trypanosoma brucei brucei | NA | Total cell lysate | ABE | x | List: 126 hits | |
SPalmE:3 | Ivaldi C et al. | 2012 | Homo sapiens | B-cell | Total membrane | ABE | x | HC HC: 93 hits | |
SPalmE:4 | Marin EP et al. | 2012 | Homo sapiens | Umbilical vein blood | NA | ABE | x | List: 154 hits | |
SPalmE:11 | Li Y et al. | 2012 | Mus musculus | Neural stem cell | Total cell lysate | Click chemistry | x | HC HC: 254 hits | |
SPalmE:162 | Jones ML et al. | 2012 | Plasmodium falciparum | Whole organism | Total cell lysate | ABE | x |
HC: 100 hits LC: 217 hits |
|
SPalmE:580 | Jones ML et al. | 2012 | Plasmodium falciparum | Whole organism | Total cell lysate | Click chemistry, SILAC | x |
HC: 79 hits LC: 89 hits |
|
SPalmE:15 | Hemsley PA et al. | 2013 | Arabidopsis thaliana | Heyn Col-4 ecotype root cell suspension | Microsomal membrane | ABE | Ortholog | in LC [RABG1] |
HC: 122 hits MC: 94 hits LC: 366 hits |
SPalmE:119 | Wan J et al. | 2013 | Mus musculus | Brain | Total cell lysate | ABE | Found | in List | List: 378 hits |
SPalmE:160 | Zhang MM et al. | 2013 | Schizosaccharomyces pombe | Whole organism | Total cell lysate | Click chemistry | x | List: 238 hits | |
SPalmE:9 | Ren W et al. | 2013 | Mus musculus | 3T3-L1 and epididymal fat pads | Total membrane | ARAC | x | List: 664 hits | |
SPalmE:184 | Wei X et al. | 2014 | Homo sapiens | HUVEC | Total cell lysate | ABE | x |
Palm decreased: 40 hits Palm increased: 33 hits List: 367 hits |
|
SPalmE:507 | Chesarino NM et al. | 2014 | Mus musculus | DC2.4 | Total cell lysate | Click chemistry | x | List: 246 hits | |
SPalmE:508 | Chesarino NM et al. | 2014 | Mus musculus | MEF | Total cell lysate | Click chemistry | x | List: 436 hits | |
SPalmE:504 | Serwa RA et al. | 2015 | Homo sapiens | RPE-1 | Total cell lysate | SILAC, 16-HDYA labeling | Ortholog | in List [RAB7A] | List: 1348 hits |
SPalmE:505 | Morrison E et al. | 2015 | Homo sapiens | Primary CD4 + T cells | Total cell lysate | ABE, In gel SILAC labeling | x | List: 274 hits | |
SPalmE:506 | Morrison E et al. | 2015 | Homo sapiens | Jurkat | Total cell lysate | Click chemistry, SILAC | x | List: 226 hits | |
SPalmE:509 | Santiago-Tirado FH et al. | 2015 | Cryptococcus neoformans | NA | Total cell lysate | Click chemistry | x | List: 426 hits | |
SPalmE:510 | Santiago-Tirado FH et al. | 2015 | Cryptococcus neoformans | NA | Total cell lysate | Click chemistry | x | List: 354 hits | |
SPalmE:529 | Colquhoun DR et al. | 2015 | Homo sapiens | 174 x CEM.T1 | Total cell lysate | Click-IT Palmitic Acid labeling | x | List: 113 hits | |
SPalmE:536 | Foe IT et al. | 2015 | Toxoplasma gondii | NA | Total membrane | Click chemistry | x |
HC: 210 hits MC: 72 hits |
|
SPalmE:540 | Gould NS et al. | 2015 | Mus musculus | Liver | Total cell lysate | APE | x | List: 780 hits | |
SPalmE:619 | Peng T et al. | 2015 | Homo sapiens | HEK293 | Total cell lysate | Alk16 Labeling | x | List: 354 hits | |
SPalmE:620 | Peng T et al. | 2015 | Homo sapiens | HEK293 | Total cell lysate | Photo cleavable x-alk16 labeling | x | List: 354 hits | |
SPalmE:698 | Pinner AL et al. | 2016 | Homo sapiens | Brain | Total cell lysate | ABE | Ortholog | in List [RAB7A] | List: 216 hits |
SPalmE:723 | Hernandez JL et al. | 2016 | Homo sapiens | MCF7 | Total cell lysate | Alk16 Labeling | Ortholog | in List [RAB7A] | List: 1353 hits |
SPalmE:724 | Fang C et al. | 2016 | Homo sapiens | SW480 | NA | ARAC | x | List: 100 hits | |
SPalmE:829 | Upadhyay S et al. | 2016 | Aspergillus fumigatus | Conidia | NA | ABE | x | List: 133 hits | |
SPalmE:902 | Caballero MC et al. | 2016 | Toxoplasma gondii | whole parasite lysates | NA | ABE | x | HC: 164 hits | |
SPalmE:909 | Thinon E et al. | 2016 | Mus musculus | Macrophage Raw 264.7 | Total cell lysate | Alk16 Labeling | x |
HC: 197 hits MC: 143 hits LC: 302 hits |
|
SPalmE:903 | Collins MO et al. | 2017 | Mus musculus | Forebrain | NA | ABE | Found | in HC | HC: 1079 hits |
SPalmE:906 | Edmonds MJ et al. | 2017 | Rattus norvegicus | Brain | NA | ABE | x | List: 193 hits | |
SPalmE:907 | Edmonds MJ et al. | 2017 | Rattus norvegicus | Brain | NA | ARAC | x | List: 95 hits | |
SPalmE:855 | Shen LF et al. | 2017 | Mus musculus | Liver | Total membrane | ARAC | Found | in List | List: 865 hits |
SPalmE:993 | Shen LF et al. | 2017 | Mus musculus | Liver | Total membrane | ARAC | x | ZDHHC13 substrates: 16 hits | |
SPalmE:1187 | Thinon E et al. | 2018 | Mus musculus | Macrophage Raw 264.7 | Total cell lysate | ARAC | Found | in MC |
HC: 281 hits MC: 139 hits LC: 113 hits |
SPalmE:908 | Sobocińska J et al. | 2018 | Mus musculus | Macrophage Raw 264.7 | Total cell lysate | Click chemistry | Found | in Palm. up with LPS |
Palm. up with LPS: 156 hits Palm. down with LPS: 189 hits |
SPalmE:919 | Sobocińska J et al. | 2018 | Mus musculus | Macrophage Raw 264.7 | Total cell lysate | Click chemistry | Found | in List | List: 646 hits |
SPalmE:920 | Sobocińska J et al. | 2018 | Mus musculus | Macrophage Raw 264.7 | Total cell lysate | Click chemistry | Found | in LPS treatment | LPS treatment: 646 hits |
SPalmE:1183 | Thinon E et al. | 2018 | Homo sapiens | HeLa | Total cell lysate | NH2OH cleavage of thioester bond, Alk16 Labeling | x |
HC: 132 hits MC: 138 hits LC: 110 hits |
|
SPalmE:1182 | Thinon E et al. | 2018 | Mus musculus | Macrophage Raw 264.7 | Total cell lysate | ARAC | x |
HC: 198 hits MC: 143 hits LC: 120 hits |
|
SPalmE:1192 | Won SJ et al. | 2018 | Homo sapiens | HAP1 | Total cell lysate | Click chemistry | Ortholog | in List [RAB7A] | List: 984 hits |
SPalmE:1194 | Won SJ et al. | 2018 | Homo sapiens | HAP1 | Total cell lysate | ARAC, | Ortholog | in List [RAB7A] | List: 1404 hits |
SPalmE:1193 | Won SJ et al. | 2018 | Homo sapiens | HAP1 | Total cell lysate | ARAC | Ortholog | in List [RAB7A] | List: 1394 hits |
SPalmE:1203 | Zhang X et al. | 2018 | Mus musculus | Brain | Total membrane | Enrichment by magnetic nanoparticles | x |
HC: 917 hits MC: 352 hits LC: 15 hits |
|
SPalmE:1184 | Thinon E et al. | 2018 | Homo sapiens | HeLa | Total cell lysate | ARAC | x |
HC: 545 hits MC: 415 hits LC: 219 hits |
|
SPalmE:1185 | Thinon E et al. | 2018 | Homo sapiens | HeLa | Total cell lysate | NH2OH cleavage of thioester bond, LC-MS, Alk16 Labeling | x |
Chymotrypsin: 286 hits Trypsin: 1291 hits |
|
SPalmE:1191 | Won SJ et al. | 2018 | Homo sapiens | HEK293T | Total cell lysate | Click chemistry | Ortholog | in List [RAB7A] | List: 195 hits |
SPalmE:1181 | Thinon E et al. | 2018 | Mus musculus | Macrophage Raw 264.7 | Total cell lysate | NH2OH cleavage of thioester bond, Alk16 Labeling | Found | in MC |
HC: 244 hits MC: 187 hits LC: 120 hits |
SPalmE:1186 | Thinon E et al. | 2018 | Mus musculus | Macrophage Raw 264.7 | Total cell lysate | NH2OH cleavage of thioester bond, Alk16 Labeling | Found | in LC |
HC: 177 hits MC: 162 hits LC: 123 hits |
SPalmE:1260 | Wang Z et al. | 2018 | Bos taurus | Lens fiber cell | Total cell lysate | ABE, NH2OH cleavage of thioester bond, LC-MS | x | List: 52 hits | |
SPalmE:1259 | Dumoulin A et al. | 2018 | Mus musculus | F11 | Total membrane | ABE, NH2OH cleavage of thioester bond, LC-MS | x |
HC: 1 hits MC: 10 hits LC: 4 hits |
|
SPalmE:1303 | Zaręba-Kozioł M et al. | 2019 | Mus musculus | Brain | Postsynaptic density fraction | ABE, NH2OH cleavage of thioester bond, LC-MS | x | ||
SPalmE:1333 | Zaręba-Kozioł M et al. | 2019 | Mus musculus | Brain | Postsynaptic density fraction | ABE, NH2OH cleavage of thioester bond, LC-MS | x | ||
SPalmE:1270 | Strassburger K et al. | 2019 | Drosophila melanogaster | Circa 160 L2 larvae | Total cell lysate | ABE, NH2OH cleavage of thioester bond, PAT KO, MS | x | List: 13 hits | |
SPalmE:1266 | Strassburger K et al. | 2019 | Drosophila melanogaster | Circa 160 L2 larvae | Total cell lysate | ABE, NH2OH cleavage of thioester bond, PAT KO, MS | x | List: 157 hits | |
SPalmE:1265 | Wang J et al. | 2019 | Mus musculus | 3T3-L1 | Total membrane | MS, BioID | x | List: 9 hits |
Summary table by organism
Organism | Total number of palmitoyl-proteome articles | Total number of palmitoyl-proteomes | Number of palmitoyl-proteomes containing this protein or an ortholog | % of palmitoyl-proteomes containing this protein or an ortholog | Orthologs |
---|---|---|---|---|---|
S. cerevisiae S288c | 1 | 1 | 0 | 0.0 | NA |
R. norvegicus | 2 | 3 | 1 | 33.3 | RAB7A_RAT |
H. sapiens | 17 | 26 | 8 | 30.8 | RAB7A_HUMAN |
M. musculus | 17 | 25 | 10 | 40.0 | NA |
T. brucei brucei | 1 | 1 | 0 | 0.0 | NA |
P. falciparum | 1 | 2 | 0 | 0.0 | NA |
A. thaliana | 1 | 1 | 1 | 100.0 | RABG1_ARATH |
S. pombe | 1 | 1 | 0 | 0.0 | NA |
C. neoformans var. grubii serotype A strain H99 | 1 | 2 | 0 | 0.0 | NA |
T. gondii | 2 | 2 | 0 | 0.0 | NA |
A. fumigatus | 1 | 1 | 0 | 0.0 | NA |
B. taurus | 1 | 1 | 0 | 0.0 | NA |
D. melanogaster | 1 | 2 | 0 | 0.0 | NA |