SwissPalm

Protein general information from UniProt

Protein names

Palmitoyltransferase ZDHHC13, EC 2.3.1.225; Huntingtin-interacting protein 14-related protein, HIP14-related protein; Zinc finger DHHC domain-containing protein 13, DHHC-13

Subcellular location

Cytoplasmic vesicle membrane; Golgi apparatus membrane

Isoforms & protein length

Isoform 1 (main): 622 aa

Known functions

Palmitoyltransferase that could catalyze the addition of palmitate onto various protein substrates (PubMed:18794299, PubMed:19299482). Palmitoyltransferase for HTT and GAD2 (PubMed:19299482, PubMed:20548961). May play a role in Mg(2+) transport (PubMed:18794299). hexadecanoyl-CoA + L-cysteinyl-[protein] = CoA + S-hexadecanoyl-L-cysteinyl-[protein] Interacts (via ANK repeats) with CLIP3 (PubMed:26198635). Interacts (via ANK repeats) with DNAJC5 (via C-terminus) (PubMed:25253725, PubMed:26198635). Interacts (via ANK repeats) with HTT (PubMed:26198635). Interacts (via ANK repeats) with MAP6 (PubMed:26198635). Interacts (via ANK repeats) with SNAP23 (PubMed:26198635). Interacts (via ANK repeats) with SNAP25 (PubMed:25253725, PubMed:26198635). May interact (via ANK repeats) with SPRED2 (PubMed:28882895). Low extracellular Mg(2+) induces increase in Golgi and in post-Golgi vesicles. Expressed in most adult tissues, but at low levels in the liver, skin, and lung. Expressed most highly in the liver, lung, and brain at posnatal day 2 (P2). In contrast, expressed most highly in skin at P8 in the epithelium surrounding the hair follicles. Up-regulated by low extracellular Mg(2+). The DHHC domain is required for palmitoyltransferase activity. Knockdown of the expression in mice through ENU-induced stop codon in the gene or targeted knockout of the gene result is similar phenotypes (PubMed:20548961). Mutant mice are normal at birth, but by postnatal day 7 appear smaller (PubMed:20548961). They display generalized hypotrichosis and hair loss with altered skin that is loose with wrinkling and folding (PubMed:20548961). Kyphosis and osteoporosisis are also observed (PubMed:20548961). Finally, a generalized amyloid deposition results in early death (PubMed:20548961). Belongs to the DHHC palmitoyltransferase family. AKR/ZDHHC17 subfamily. Palmitoyltransferase for HTT and GAD2 (PubMed:19299482). May play a role in Mg(2+) transport (PubMed:18794299). Palmitoyl-CoA + [protein]-L-cysteine = [protein]-S-palmitoyl-L-cysteine + CoA. Interacts (via ANK repeats) with CLIP3 (PubMed:26198635). Interacts (via ANK repeats) with DNAJC5 (via C-terminus) (PubMed:25253725, PubMed:26198635). Interacts (via ANK repeats) with HTT (PubMed:26198635). Interacts (via ANK repeats) with MAP6 (PubMed:26198635). Interacts (via ANK repeats) with SNAP23 (PubMed:26198635). Interacts (via ANK repeats) with SNAP25 (PubMed:25253725, PubMed:26198635). May interact (via ANK repeats) with SPRED2 (PubMed:28882895). Low extracellular Mg(2+) induces increase in Golgi and in post-Golgi vesicles. Up-regulated by low extracellular Mg(2+). The DHHC domain is required for palmitoyltransferase activity. Belongs to the DHHC palmitoyltransferase family. AKR/ZDHHC17 subfamily. Palmitoyltransferase for HTT and GAD2 (PubMed:19299482). May play a role in Mg(2+) transport (PubMed:18794299). hexadecanoyl-CoA + L-cysteinyl-[protein] = CoA + S-hexadecanoyl-L-cysteinyl-[protein] Interacts (via ANK repeats) with CLIP3 (PubMed:26198635). Interacts (via ANK repeats) with DNAJC5 (via C-terminus) (PubMed:25253725, PubMed:26198635). Interacts (via ANK repeats) with HTT (PubMed:26198635). Interacts (via ANK repeats) with MAP6 (PubMed:26198635). Interacts (via ANK repeats) with SNAP23 (PubMed:26198635). Interacts (via ANK repeats) with SNAP25 (PubMed:25253725, PubMed:26198635). May interact (via ANK repeats) with SPRED2 (PubMed:28882895). Low extracellular Mg(2+) induces increase in Golgi and in post-Golgi vesicles. Up-regulated by low extracellular Mg(2+). The DHHC domain is required for palmitoyltransferase activity. Belongs to the DHHC palmitoyltransferase family. AKR/ZDHHC17 subfamily.

Cross-references

Source	Identifiers
UniProt gene names	Hip14l, Zdhhc13
UniProt secondary AC	Q3UKV1, Q3UK32
Refseq protein ID	NP_082307.1
IPI ID	IPI00173188, IPI00187236

Source	Identifiers
Ensembl protein	ENSMUSP00000112498
Ensembl gene	ENSMUSG00000030471
MGI ID	MGI:1919227
BrainPalmSeq	zdhhcs-2/search-by-gene-zdhhc13

Protein acyltransferase activity (PAT)

Substrate UniProt ID	Substrate description	Substrate isoform AC (site position)	Experiments
HD_MOUSE	Huntingtin	P42859	SPalmE:697 Singaraja RR et al. (2011)
MMP14_MOUSE	Matrix metalloproteinase-14, MMP-14, EC 3.4.24.80	P53690-1 (574)	SPalmE:358 Song IW et al. (2014)
MSHR_HUMAN	Melanocyte-stimulating hormone receptor, MSH-R	Q01726 (315)	SPalmE:991 Chen S et al. (2017) SPalmE:990 Chen S et al. (2017)
ABCBB_MOUSE	Bile salt export pump, EC 7.6.2.-	Q9QY30	SPalmE:855 Shen LF et al. (2017)*
CLIC4_MOUSE	Chloride intracellular channel protein 4, mc3s5/mtCLIC	Q9QYB1	SPalmE:855 Shen LF et al. (2017)*
ABHD1_MOUSE	Protein ABHD1, EC 3.1.1.-	Q9QZC8	SPalmE:855 Shen LF et al. (2017)*
DIC_MOUSE	Mitochondrial dicarboxylate carrier	Q9QZD8	SPalmE:855 Shen LF et al. (2017)*
COPG1_MOUSE	Coatomer subunit gamma-1	Q9QZE5	SPalmE:855 Shen LF et al. (2017)*
SERC1_MOUSE	Serine incorporator 1	Q9QZI8	SPalmE:855 Shen LF et al. (2017)*
AT11C_MOUSE	Phospholipid-transporting ATPase 11C, EC 7.6.2.1	Q9QZW0	SPalmE:855 Shen LF et al. (2017)*
H17B6_MOUSE	17-beta-hydroxysteroid dehydrogenase type 6, 17-beta-HSD 6, 17-beta-HSD6, EC 1.1.1.105, EC 1.1.1.209, EC 1.1.1.239, EC 1.1.1.53, EC 1.1.1.62	Q9R092	SPalmE:855 Shen LF et al. (2017)*
ACOX1_MOUSE	Peroxisomal acyl-coenzyme A oxidase 1, AOX, EC 1.3.3.6	Q9R0H0	SPalmE:855 Shen LF et al. (2017)*
PROD_MOUSE	Proline dehydrogenase 1, mitochondrial, EC 1.5.5.2	Q9WU79	SPalmE:855 Shen LF et al. (2017)*
ORNT1_MOUSE	Mitochondrial ornithine transporter 1	Q9WVD5	SPalmE:855 Shen LF et al. (2017)*
PSD13_MOUSE	26S proteasome non-ATPase regulatory subunit 13	Q9WVJ2	SPalmE:855 Shen LF et al. (2017)*
CP46A_MOUSE	Cholesterol 24-hydroxylase, CH24H, EC 1.14.14.25	Q9WVK8	SPalmE:855 Shen LF et al. (2017)*
NDUA7_MOUSE	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7	Q9Z1P6	SPalmE:855 Shen LF et al. (2017)*
USO1_MOUSE	General vesicular transport factor p115	Q9Z1Z0	SPalmE:855 Shen LF et al. (2017)*
MCAT_MOUSE	Mitochondrial carnitine/acylcarnitine carrier protein	Q9Z2Z6	SPalmE:855 Shen LF et al. (2017)*
DNM1L_MOUSE	Dynamin-1-like protein, EC 3.6.5.5	Q8K1M6	SPalmE:1064 Napoli E et al. (2017)
M3K12_MOUSE	Mitogen-activated protein kinase kinase kinase 12, EC 2.7.11.25	Q60700 (436)	SPalmE:1421 Niu J et al. (2020) []
NMNA2_MOUSE	Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 2, NMN/NaMN adenylyltransferase 2, EC 2.7.7.1, EC 2.7.7.18	Q8BNJ3	SPalmE:1421 Niu J et al. (2020) []

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Isoform sequence alignment

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Orthologs

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UniProt AC	UniProt ID	Orthology source	Organism	Gene names	Protein name	Palmitome articles	Times validated	Techniques	Sites	Predicted
P39010	AKR1_YEAST	OMA, InParanoid	S. cerevisiae S288c	YD9230B.03C, D9954.9, YDR264C, AKR1	Palmitoyltransferase AKR1, EC 2.3.1.225	1/1	3	1	0	No
Q8IUH4	ZDH13_HUMAN	MetaPhors, OrthoDB, OMA, Ensembl, InParanoid	H. sapiens	HIP3RP, HIP14L, ZDHHC13	Palmitoyltransferase ZDHHC13, EC 2.3.1.225	8/22	1	4	0	Yes
Q3EC11	ZDHC2_ARATH	InParanoid	A. thaliana	PAT23, T1O16.20, At2g14255	Probable protein S-acyltransferase 23, EC 2.3.1.225	0/1	0	0	0	No
Q52T38	ZDH22_ARATH	InParanoid	A. thaliana	PAT24, F5O24.240, At5g20350, TIP1	Protein S-acyltransferase 24, EC 2.3.1.225	1/1	1	1	1	Yes
Q7KUD4	Q7KUD4_DROME	MetaPhors	D. melanogaster	diPLA2-VIA, Dmel_CG6718, CG6718, Dmel\CG6718, iPLA2-VIA	Phospholipase A	0/1	0	0	0	No
F4J4V1	F4J4V1_ARATH	MetaPhors	A. thaliana	F7O18_18, F7O18.18, At3g04710, tetratricopeptide repeat 10, TPR10	Ankyrin repeat family protein	0/1	0	0	0	No
E9PU37	E9PU37_RAT	MetaPhors, OrthoDB, OMA, Ensembl, InParanoid	R. norvegicus	Zdhhc13	Palmitoyltransferase	0/3	0	0	0	Yes
J9P5M3	J9P5M3_CANLF	OrthoDB, Ensembl	C. familiaris	ZDHHC13	Palmitoyltransferase	0/1	0	0	0	Yes
F1MCX6	F1MCX6_BOVIN	MetaPhors, OrthoDB, OMA, Ensembl, InParanoid	B. taurus	ZDHHC13	Palmitoyltransferase	0/2	0	0	0	Yes
Q9VUW9	HIP14_DROME	MetaPhors, OrthoDB, Ensembl	D. melanogaster	Dmel_CG6017, CG6017, Hip14	Palmitoyltransferase Hip14, EC 2.3.1.225	1/1	0	2	0	Yes
Q12013	AKR2_YEAST	OMA, InParanoid	S. cerevisiae S288c	OR26.25, YOR034C, AKR2	Probable palmitoyltransferase AKR2, EC 2.3.1.225	0/1	0	0	0	No
Q8IE90	Q8IE90_PLAF7	OMA, InParanoid	P. falciparum	PF3D7_1322500	Palmitoyltransferase	0/1	0	0	0	Yes
Q09701	AKR1_SCHPO	MetaPhors, OMA, InParanoid	S. pombe	SPAC2F7.10, akr1	Palmitoyltransferase akr1	0/1	0	0	0	No
F1PMM2	F1PMM2_CANLF	OMA, Ensembl, InParanoid	C. familiaris	ZDHHC13	Palmitoyltransferase	0/1	0	0	0	Yes
M9PFE4	M9PFE4_DROME	MetaPhors, Ensembl	D. melanogaster	HIP14, Dmel_CG6017, CG6017, Hip14, l(3)72Ad, hip14, Dmel\CG6017, dHIP14, CG 6017, 3L1	Palmitoyltransferase	0/1	0	0	0	Yes

Ortholog sequence alignment (CLUSTALW)

Validation experiments

ID of the experiment	Reference	Year	Organism	Cell type	Subcellular location	Technique(s)
SPalmE:358	Song IW et al.	2014	Homo sapiens	HEK293	Total cell lysate	2BP inhibition, ABE, Co-IP of PAT and substrate, NH2OH cleavage of thioester bond, PAT overexpression, PAT truncation, Point mutation
SPalmE:697	Singaraja RR et al.	2011	Mus musculus	NA	NA	ABE, NH2OH cleavage of thioester bond, PAT overexpression
SPalmE:990	Chen S et al.	2017	Homo sapiens	B16 melanoma	Total cell lysate	2BP inhibition, ABE, MS, NH2OH cleavage of thioester bond, Palmostatin B inhibition, Point mutation
SPalmE:991	Chen S et al.	2017	Homo sapiens	Human primary melanocytes	Total cell lysate	2BP inhibition, ABE, Co-IP of PAT and substrate, Depletion of PAT by shRNA, MS, NH2OH cleavage of thioester bond, PAT overexpression, Palmostatin B inhibition, Point mutation
SPalmE:1064	Napoli E et al.	2017	Mus musculus	Cerebellum	Total cell lysate	2BP inhibition, ABE, Co-IP of PAT and substrate, NH2OH cleavage of thioester bond, PAT KO
SPalmE:1421	Niu J et al.	2020	Mus musculus	NA	NA	ABE, Co-IP of PAT and substrate, IF localization, PAT KO, PAT localization by IF, PAT localization by fluorescent tag, Point mutation

Cysteine summary and predictions

Pos in alignment	10	28	51	65	290	322	428	431	442	445	448	456	462	482
Subcell. location	C	C	C	C	C	T	C	C	C	C	C	C	C	T
Disulfide	no	no	no	no	no	no	no	no	no	no	no	no	no	no
PSIPRED v.4.02 prediction	coil	coil	coil	helix	helix	helix	coil	coil	coil	coil	strand	coil	helix	helix
UniProt secondary structure	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Pos in isoform 1 [Main] CSS-Palm 4.0 PalmPred	Cys¹⁰ HC	Cys²⁸	Cys⁵¹	Cys⁶⁵	Cys²⁹⁰	Cys³²² LC	Cys⁴²⁸	Cys⁴³¹	Cys⁴⁴²	Cys⁴⁴⁵	Cys⁴⁴⁸	Cys⁴⁵⁶	Cys⁴⁶² MC	Cys⁴⁸²

Pos in alignment	497	516	590	592	599
Subcell. location	E	E	C	C	C
Disulfide	no	no	no	no	no
PSIPRED v.4.02 prediction	coil	helix	coil	coil	coil
UniProt secondary structure	NA	NA	NA	NA	NA
Pos in isoform 1 [Main] CSS-Palm 4.0 PalmPred	Cys⁴⁹⁷	Cys⁵¹⁶	Cys⁵⁹⁰	Cys⁵⁹²	Cys⁵⁹⁹

Legend

Subcell. location

U Undefined E Extracellular/Lumenal T Transmembrane C Cytosolic/Nuclear

Prediction confidence

Cysteine position: Predicted (high confidence prediction with CSS-Palm or/and PalmPred) and validated (in terms of disulfide bonds and cellular location) / Predicted but not validated (in terms of disulfide bond and cellular location) / Not predicted
CSS-Palm 4.0: High confidence, Medium confidence, Low confidence, Not predicted.
PalmPred: High confidence (score > 0.4), Medium confidence (0.1 < score < 0.4), Low confidence (score < 0.1), Not predicted.

Palmitoyl-proteome experiments

List of palmitoyl-proteomes

Tip: Keep CTRL key pressed down while clicking on column headers to do multiple sorting. This applies to any sortable table on this site.

ID of the experiment	Reference	Year	Organism	Cell type	Subcellular location	Technique(s)	Found?	In list	All lists
SPalmE:14	Roth AF et al.	2006	Saccharomyces cerevisiae	Isogenic LRB759	Total membrane	ABE	Ortholog	in HC [AKR1]	HC HC: 48 hits
SPalmE:13	Kang R et al.	2008	Rattus norvegicus	Cortical neuron	Synaptosomal membrane	ABE	x		HC: 107 hits LC: 308 hits
SPalmE:6	Martin BR et al.	2009	Homo sapiens	Jurkat	Total membrane	Click chemistry	x		HC: 127 hits LC: 188 hits List: 0 hits
SPalmE:577	Yang W et al.	2010	Homo sapiens	DU145	Non-lipid raft	ABE	x		HC: 63 hits LC: 147 hits
SPalmE:578	Yang W et al.	2010	Homo sapiens	DU145	Lipid raft	ABE	x		HC: 102 hits LC: 73 hits
SPalmE:10	Yount JS et al.	2010	Mus musculus	Dendritic cell	Total cell lysate	Click chemistry	x		HC: 59 hits LC: 105 hits
SPalmE:1	Yang W et al.	2010	Homo sapiens	DU145	Total membrane	ABE	x		HC: 162 hits LC: 218 hits
SPalmE:5	Forrester MT et al.	2011	Homo sapiens	HEK293	Total membrane	ARAC	x		List: 69 hits
SPalmE:8	Merrick BA et al.	2011	Mus musculus	Macrophage Raw 264.7	Total membrane	ABE	x		List: 69 hits
SPalmE:12	Martin BR et al.	2011	Mus musculus	BW5147-derived mouse T-cell hybridoma cell	Total membrane	Click chemistry	x		HC HC: 352 hits LC LC: 8 hits
SPalmE:511	Emmer BT et al.	2011	Trypanosoma brucei brucei	NA	Total cell lysate	ABE	x		List: 126 hits
SPalmE:2	Dowal L et al.	2011	Homo sapiens	Platelet	Total membrane	ABE	x		List: 214 hits
SPalmE:7	Wilson JP et al.	2011	Homo sapiens	Jurkat	Total cell lysate	Click chemistry	x		HC: 164 hits LC: 178 hits
SPalmE:4	Marin EP et al.	2012	Homo sapiens	Umbilical vein blood	NA	ABE	x		List: 154 hits
SPalmE:11	Li Y et al.	2012	Mus musculus	Neural stem cell	Total cell lysate	Click chemistry	Found	in HC	HC HC: 254 hits
SPalmE:162	Jones ML et al.	2012	Plasmodium falciparum	Whole organism	Total cell lysate	ABE	x		HC: 100 hits LC: 217 hits
SPalmE:580	Jones ML et al.	2012	Plasmodium falciparum	Whole organism	Total cell lysate	Click chemistry, SILAC	x		HC: 79 hits LC: 89 hits
SPalmE:3	Ivaldi C et al.	2012	Homo sapiens	B-cell	Total membrane	ABE	x		HC HC: 93 hits
SPalmE:119	Wan J et al.	2013	Mus musculus	Brain	Total cell lysate	ABE	x		List: 378 hits
SPalmE:160	Zhang MM et al.	2013	Schizosaccharomyces pombe	Whole organism	Total cell lysate	Click chemistry	x		List: 238 hits
SPalmE:9	Ren W et al.	2013	Mus musculus	3T3-L1 and epididymal fat pads	Total membrane	ARAC	x		List: 664 hits
SPalmE:15	Hemsley PA et al.	2013	Arabidopsis thaliana	Heyn Col-4 ecotype root cell suspension	Microsomal membrane	ABE	Ortholog	in HC [ZDH22]	HC: 122 hits MC: 94 hits LC: 366 hits
SPalmE:184	Wei X et al.	2014	Homo sapiens	HUVEC	Total cell lysate	ABE	Ortholog	in List [ZDH13]	Palm decreased: 40 hits Palm increased: 33 hits List: 367 hits
SPalmE:507	Chesarino NM et al.	2014	Mus musculus	DC2.4	Total cell lysate	Click chemistry	Found	in List	List: 246 hits
SPalmE:508	Chesarino NM et al.	2014	Mus musculus	MEF	Total cell lysate	Click chemistry	x		List: 436 hits
SPalmE:504	Serwa RA et al.	2015	Homo sapiens	RPE-1	Total cell lysate	SILAC, 16-HDYA labeling	Ortholog	in List [ZDH13]	List: 1348 hits
SPalmE:505	Morrison E et al.	2015	Homo sapiens	Primary CD4 + T cells	Total cell lysate	ABE, In gel SILAC labeling	x		List: 274 hits
SPalmE:506	Morrison E et al.	2015	Homo sapiens	Jurkat	Total cell lysate	Click chemistry, SILAC	Ortholog	in List [ZDH13]	List: 226 hits
SPalmE:510	Santiago-Tirado FH et al.	2015	Cryptococcus neoformans	NA	Total cell lysate	Click chemistry	x		List: 354 hits
SPalmE:529	Colquhoun DR et al.	2015	Homo sapiens	174 x CEM.T1	Total cell lysate	Click-IT Palmitic Acid labeling	x		List: 113 hits
SPalmE:536	Foe IT et al.	2015	Toxoplasma gondii	NA	Total membrane	Click chemistry	x		HC: 210 hits MC: 72 hits
SPalmE:540	Gould NS et al.	2015	Mus musculus	Liver	Total cell lysate	APE	x		List: 780 hits
SPalmE:619	Peng T et al.	2015	Homo sapiens	HEK293	Total cell lysate	Alk16 Labeling	Ortholog	in List [ZDH13]	List: 354 hits
SPalmE:620	Peng T et al.	2015	Homo sapiens	HEK293	Total cell lysate	Photo cleavable x-alk16 labeling	Ortholog	in List [ZDH13]	List: 354 hits
SPalmE:509	Santiago-Tirado FH et al.	2015	Cryptococcus neoformans	NA	Total cell lysate	Click chemistry	x		List: 426 hits
SPalmE:698	Pinner AL et al.	2016	Homo sapiens	Brain	Total cell lysate	ABE	x		List: 216 hits
SPalmE:723	Hernandez JL et al.	2016	Homo sapiens	MCF7	Total cell lysate	Alk16 Labeling	x		List: 1353 hits
SPalmE:724	Fang C et al.	2016	Homo sapiens	SW480	NA	ARAC	x		List: 100 hits
SPalmE:829	Upadhyay S et al.	2016	Aspergillus fumigatus	Conidia	NA	ABE	x		List: 133 hits
SPalmE:902	Caballero MC et al.	2016	Toxoplasma gondii	whole parasite lysates	NA	ABE	x		HC: 164 hits
SPalmE:909	Thinon E et al.	2016	Mus musculus	Macrophage Raw 264.7	Total cell lysate	Alk16 Labeling	Found	in LC	HC: 197 hits MC: 143 hits LC: 302 hits
SPalmE:855	Shen LF et al.	2017	Mus musculus	Liver	Total membrane	ARAC	Found		List: 865 hits
SPalmE:903	Collins MO et al.	2017	Mus musculus	Forebrain	NA	ABE	x		HC: 1079 hits
SPalmE:906	Edmonds MJ et al.	2017	Rattus norvegicus	Brain	NA	ABE	x		List: 193 hits
SPalmE:907	Edmonds MJ et al.	2017	Rattus norvegicus	Brain	NA	ARAC	x		List: 95 hits
SPalmE:993	Shen LF et al.	2017	Mus musculus	Liver	Total membrane	ARAC	x		ZDHHC13 substrates: 16 hits
SPalmE:908	Sobocińska J et al.	2018	Mus musculus	Macrophage Raw 264.7	Total cell lysate	Click chemistry	x		Palm. up with LPS: 156 hits Palm. down with LPS: 189 hits
SPalmE:919	Sobocińska J et al.	2018	Mus musculus	Macrophage Raw 264.7	Total cell lysate	Click chemistry	Found	in List	List: 646 hits
SPalmE:920	Sobocińska J et al.	2018	Mus musculus	Macrophage Raw 264.7	Total cell lysate	Click chemistry	Found	in LPS treatment	LPS treatment: 646 hits
SPalmE:1181	Thinon E et al.	2018	Mus musculus	Macrophage Raw 264.7	Total cell lysate	NH2OH cleavage of thioester bond, Alk16 Labeling	Found	in MC	HC: 244 hits MC: 187 hits LC: 120 hits
SPalmE:1182	Thinon E et al.	2018	Mus musculus	Macrophage Raw 264.7	Total cell lysate	ARAC	Found	in HC	HC: 198 hits MC: 143 hits LC: 120 hits
SPalmE:1183	Thinon E et al.	2018	Homo sapiens	HeLa	Total cell lysate	NH2OH cleavage of thioester bond, Alk16 Labeling	x		HC: 132 hits MC: 138 hits LC: 110 hits
SPalmE:1184	Thinon E et al.	2018	Homo sapiens	HeLa	Total cell lysate	ARAC	x		HC: 545 hits MC: 415 hits LC: 219 hits
SPalmE:1185	Thinon E et al.	2018	Homo sapiens	HeLa	Total cell lysate	NH2OH cleavage of thioester bond, LC-MS, Alk16 Labeling	x		Chymotrypsin: 286 hits Trypsin: 1291 hits
SPalmE:1186	Thinon E et al.	2018	Mus musculus	Macrophage Raw 264.7	Total cell lysate	NH2OH cleavage of thioester bond, Alk16 Labeling	Found	in MC	HC: 177 hits MC: 162 hits LC: 123 hits
SPalmE:1187	Thinon E et al.	2018	Mus musculus	Macrophage Raw 264.7	Total cell lysate	ARAC	Found	in HC	HC: 281 hits MC: 139 hits LC: 113 hits
SPalmE:1191	Won SJ et al.	2018	Homo sapiens	HEK293T	Total cell lysate	Click chemistry	x		List: 195 hits
SPalmE:1192	Won SJ et al.	2018	Homo sapiens	HAP1	Total cell lysate	Click chemistry	x		List: 984 hits
SPalmE:1193	Won SJ et al.	2018	Homo sapiens	HAP1	Total cell lysate	ARAC	Ortholog	in List [ZDH13]	List: 1394 hits
SPalmE:1194	Won SJ et al.	2018	Homo sapiens	HAP1	Total cell lysate	ARAC,	Ortholog	in List [ZDH13]	List: 1404 hits
SPalmE:1203	Zhang X et al.	2018	Mus musculus	Brain	Total membrane	Enrichment by magnetic nanoparticles	x		HC: 917 hits MC: 352 hits LC: 15 hits
SPalmE:1259	Dumoulin A et al.	2018	Mus musculus	F11	Total membrane	ABE, NH2OH cleavage of thioester bond, LC-MS	Found	in LC	HC: 1 hits MC: 10 hits LC: 4 hits
SPalmE:1260	Wang Z et al.	2018	Bos taurus	Lens fiber cell	Total cell lysate	ABE, NH2OH cleavage of thioester bond, LC-MS	x		List: 52 hits
SPalmE:1265	Wang J et al.	2019	Mus musculus	3T3-L1	Total membrane	MS, BioID	x		List: 9 hits
SPalmE:1266	Strassburger K et al.	2019	Drosophila melanogaster	Circa 160 L2 larvae	Total cell lysate	ABE, NH2OH cleavage of thioester bond, PAT KO, MS	Ortholog	in List [HIP14, M9PFE4]	List: 157 hits
SPalmE:1270	Strassburger K et al.	2019	Drosophila melanogaster	Circa 160 L2 larvae	Total cell lysate	ABE, NH2OH cleavage of thioester bond, PAT KO, MS	x		List: 13 hits
SPalmE:1303	Zaręba-Kozioł M et al.	2019	Mus musculus	Brain	Postsynaptic density fraction	ABE, NH2OH cleavage of thioester bond, LC-MS	x
SPalmE:1333	Zaręba-Kozioł M et al.	2019	Mus musculus	Brain	Postsynaptic density fraction	ABE, NH2OH cleavage of thioester bond, LC-MS	x
SPalmE:1432	Zhou B et al.	2019	Homo sapiens	LNCaP	Total cell lysate	ABE, SILAC, NH2OH cleavage of thioester bond, LC-MS	Ortholog	in List [ZDH13]	List: 590 hits
SPalmE:1433	Zhou B et al.	2019	Homo sapiens	LNCaP	Total cell lysate	NH2OH cleavage of thioester bond, LC-MS, LB-ABE, ABE	Ortholog	in List [ZDH13]	List: 2929 hits
SPalmE:1434	Wegleiter T et al.	2019	Mus musculus	Neural stem cell	Total cell lysate	ABE, NH2OH cleavage of thioester bond, LC-MS	x		List: 370 hits
SPalmE:1458	Morrison E et al.	2020	Homo sapiens	Jurkat	Total cell lysate	ABE, NH2OH cleavage of thioester bond, LC-MS, SILAC	x		Stimulated: 148 hits
SPalmE:1435	Morrison E et al.	2020	Homo sapiens	Jurkat	Total cell lysate	ABE, NH2OH cleavage of thioester bond, LC-MS, SILAC	x		Unstimulated: 37 hits
SPalmE:1436	Morrison E et al.	2020	Homo sapiens	Jurkat	Total cell lysate	ABE, NH2OH cleavage of thioester bond, LC-MS, SILAC	x		List: 185 hits
SPalmE:1437	Mariscal J et al.	2020	Homo sapiens	PC3	Total cell lysate	ARAC, NH2OH cleavage of thioester bond, LC-MS, LB-ABE	Ortholog	in HC [ZDH13]	HC: 1869 hits
SPalmE:1438	Mariscal J et al.	2020	Homo sapiens	PC3	Total membrane	ARAC, NH2OH cleavage of thioester bond, LC-MS, LB-ABE	Ortholog	in HC [ZDH13]	HC: 1837 hits
SPalmE:1439	Mariscal J et al.	2020	Homo sapiens	PC3	Large Extracellular Vesicles	ARAC, NH2OH cleavage of thioester bond, LC-MS, LB-ABE	x		HC: 1350 hits
SPalmE:1440	Mariscal J et al.	2020	Homo sapiens	PC3	Small Extracellular Vesicles	ARAC, NH2OH cleavage of thioester bond, LC-MS, LB-ABE	x		HC: 600 hits
SPalmE:1454	Ziemlińska E et al.	2021	Mus musculus	Liver	Total membrane	ABE, NH2OH cleavage of thioester bond, LC-MS	x		HC: 675 hits MC: 360 hits LC: 27 hits
SPalmE:1455	Ziemlińska E et al.	2021	Mus musculus	Liver	Total membrane	ABE, NH2OH cleavage of thioester bond, LC-MS	x		HC: 850 hits MC: 303 hits LC: 21 hits
SPalmE:1443	Uzbekova S et al.	2021	Bos taurus	Bovine follicular cells	Total cell lysate	ABE, NH2OH cleavage of thioester bond, LC-MS	x		List: 80 hits
SPalmE:1444	Miles MR et al.	2021	Homo sapiens	Heart	Total cell lysate	ARAC, NH2OH cleavage of thioester bond, LC-MS	x		List: 687 hits
SPalmE:1445	Miles MR et al.	2021	Rattus norvegicus	Heart	Total cell lysate	ARAC, NH2OH cleavage of thioester bond, LC-MS	x		List: 399 hits
SPalmE:1446	Miles MR et al.	2021	Canis familiaris	Heart	Total cell lysate	ARAC, NH2OH cleavage of thioester bond, LC-MS	x		List: 464 hits
SPalmE:1447	Pradhan AJ et al.	2021	Homo sapiens	HT-29	Total cell lysate	Labeling of substrate with C20 AlkFA (Alk-18), LC-MS	Ortholog	in List [ZDH13]	List: 1173 hits
SPalmE:1448	Pradhan AJ et al.	2021	Homo sapiens	HT-29	Total cell lysate	Labeling of substrate with C20 AlkFA (Alk-18), LC-MS	Ortholog	in List [ZDH13]	List: 770 hits
SPalmE:1449	Ripamonti M et al.	2021	Mus musculus	NIH-3T3	Total cell lysate	ARAC, NH2OH cleavage of thioester bond, LC-MS	x		List: 199 hits
SPalmE:1450	Zaręba-Kozioł M et al.	2021	Mus musculus	Brain	Synaptoneurosomal fraction	ABE, NH2OH cleavage of thioester bond, LC-MS	x		List: 1093 hits
SPalmE:1451	Zaręba-Kozioł M et al.	2021	Mus musculus	Brain	Synaptoneurosomal fraction	ABE, NH2OH cleavage of thioester bond, LC-MS	x		List: 1048 hits
SPalmE:1452	Zaręba-Kozioł M et al.	2021	Mus musculus	Brain	Synaptoneurosomal fraction	ABE, NH2OH cleavage of thioester bond, LC-MS	x		List: 1112 hits
SPalmE:1453	Zaręba-Kozioł M et al.	2021	Mus musculus	Brain	Synaptoneurosomal fraction	ABE, NH2OH cleavage of thioester bond, LC-MS	x		List: 1040 hits
SPalmE:1456	Gao J et al.	2022	Mus musculus	Testis	Total cell lysate	ABE, NH2OH cleavage of thioester bond, LC-MS	Found	in HC	HC: 4107 hits
SPalmE:1457	Gao J et al.	2022	Mus musculus	Testis	Total cell lysate	ABE, NH2OH cleavage of thioester bond, LC-MS	Found	in HC	HC: 3870 hits
SPalmE:1441	Gorenberg EL et al.	2022	Mus musculus	Brain	Synaptic fraction	ARAC, NH2OH cleavage of thioester bond, LC-MS	x		List: 1378 hits
SPalmE:1442	Gorenberg EL et al.	2022	Mus musculus	Brain	Total cell lysate	ARAC, NH2OH cleavage of thioester bond, LC-MS	x		List: 1597 hits

Summary table by organism

Organism	Total number of palmitoyl-proteome articles	Total number of palmitoyl-proteomes	Number of palmitoyl-proteomes containing this protein or an ortholog	% of palmitoyl-proteomes containing this protein or an ortholog	Orthologs
S. cerevisiae S288c	1	1	1	100.0	AKR1_YEAST
R. norvegicus	3	4	0	0.0	NA
H. sapiens	22	38	13	34.2	ZDH13_HUMAN
M. musculus	23	37	13	35.1	NA
T. brucei brucei	1	1	0	0.0	NA
P. falciparum	1	2	0	0.0	NA
S. pombe	1	1	0	0.0	NA
A. thaliana	1	1	1	100.0	ZDH22_ARATH
C. neoformans var. grubii serotype A strain H99	1	2	0	0.0	NA
T. gondii	2	2	0	0.0	NA
A. fumigatus	1	1	0	0.0	NA
B. taurus	2	2	0	0.0	NA
D. melanogaster	1	2	1	50.0	HIP14_DROME , M9PFE4_DROME
C. familiaris	1	1	0	0.0	NA

References

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Colquhoun DR et al.	2015	Bioorthogonal mimetics of palmitoyl-CoA and myristoyl-CoA and their subsequent isolation by click chemistry and characterization by mass spectrometry reveal novel acylated host-proteins modified by HIV-1 infection.	25914232
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Zhang MM et al.	2013	Quantitative control of protein S-palmitoylation regulates meiotic entry in fission yeast.	23843742
Zhang X et al.	2018	Ultradeep Palmitoylomics Enabled by Dithiodipyridine-Functionalized Magnetic Nanoparticles.	29660268
Peng T et al.	2015	Bifunctional fatty acid chemical reporter for analyzing S-palmitoylated membrane protein-protein interactions in mammalian cells.	25575299
Gao J et al.	2022	Proteome-wide identification of palmitoylated proteins in mouse testis.	35477839
Wan J et al.	2013	Tracking brain palmitoylation change: predominance of glial change in a mouse model of Huntington's disease.	24211138
Shen LF et al.	2017	Role of S-Palmitoylation by ZDHHC13 in Mitochondrial function and Metabolism in Liver.	28526873
Pradhan AJ et al.	2021	Protein acylation by saturated very long chain fatty acids and endocytosis are involved in necroptosis.	33848465
Morrison E et al.	2020	Dynamic palmitoylation events following T-cell receptor signaling.	32651440
Sobocińska J et al.	2018	Lipopolysaccharide Upregulates Palmitoylated Enzymes of the Phosphatidylinositol Cycle: An Insight from Proteomic Studies.	29217618
Yount JS et al.	2010	Palmitoylome profiling reveals S-palmitoylation-dependent antiviral activity of IFITM3.	20601941
Santiago-Tirado FH et al.	2015	A Single Protein S-acyl Transferase Acts through Diverse Substrates to Determine Cryptococcal Morphology, Stress Tolerance, and Pathogenic Outcome.	25970403
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Gould NS et al.	2015	Site-Specific Proteomic Mapping Identifies Selectively Modified Regulatory Cysteine Residues in Functionally Distinct Protein Networks.	26165157
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Zaręba-Kozioł M et al.	2019	Stress-induced changes in the S-palmitoylation and S-nitrosylation of synaptic proteins.	31311849
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Uzbekova S et al.	2021	Protein Palmitoylation in Bovine Ovarian Follicle.	34769186
Ripamonti M et al.	2021	Structural and functional analysis of LIM domain-dependent recruitment of paxillin to αvβ3 integrin-positive focal adhesions.	33782527
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Q9CWU2 ZDH13_MOUSE